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Genome Informatics. International Conference on Genome Informatics|February 12, 2005
StructMiner: a tool for alignment and detection of conserved secondary structureQian Yang, Mathieu BlanchetteBMC Bioinformatics|January 4, 2013
Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sitesMathieu BlanchetteAnnual Review of Genomics and Human Genetics|May 11, 2007
Computation and analysis of genomic multi-sequence alignmentsMathieu BlanchetteGenome Research|May 9, 2002
Discovery of regulatory elements by a computational method for phylogenetic footprintingMathieu Blanchette, Martin TompaJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 29, 2011
A probabilistic model for sequence alignment with context-sensitive indelsGlenn Hickey, Mathieu BlanchetteBioinformatics (Oxford, England)|July 14, 2020
EvoLSTM: context-dependent models of sequence evolution using a sequence-to-sequence LSTMDongjoon Lim, Mathieu BlanchetteBioinformatics (Oxford, England)|June 22, 2026
Graphylo Var: Predicting the impact of non-coding variants using a multi-species sequence modelDongjoon Lim, Mathieu BlanchetteNature Communications|December 2, 2022
Reference panel guided topological structure annotation of Hi-C dataYanlin Zhang, Mathieu BlanchettePacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|November 13, 2009
A practical algorithm for estimation of the maximum likelihood ancestral reconstruction errorGlenn Hickey, Mathieu BlanchetteNucleic Acids Research|July 18, 2006
FootPrinter3: phylogenetic footprinting in partially alignable sequencesFei Fang, Mathieu BlanchettePageof 341