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Veterinary and Animal Science|March 19, 2026
Comparison of short nasal swab and deep nasopharyngeal swab sampling methods to describe BRD-associated viruses and bacteria detected using a metagenomics approach optimized for virus recovery in fall-placed beef calves shortly after feedlot arrivalEmmanuel Donbraye, Lianne McLeod, Zhijian Chai, et al.Frontiers in Microbiology|May 23, 2024
Bacterial enrichment prior to third-generation metagenomic sequencing improves detection of BRD pathogens and genetic determinants of antimicrobial resistance in feedlot cattleEmily K Herman, Stacey R Lacoste, Claire N Freeman, et al.Frontiers in Veterinary Science|March 13, 2026
Diagnostic sensitivity and specificity of metagenomic sequencing and qPCR for detection of viruses associated with bovine respiratory disease estimated using Bayesian latent class modelsEmmanuel Donbraye, Lianne McLeod, Zhijian Chai, et al.Antibiotics (Basel, Switzerland)|November 27, 2025
Respiratory Bacteria and Antimicrobial Resistance Genes Detected by Long-Read Metagenomic Sequencing Following Feedlot Arrival, Subsequent Treatment Risk and Phenotypic Resistance in Feedlot CalvesJennifer N Abi Younes, Lianne McLeod, Stacey R Lacoste, et al.Frontiers in Microbiology|June 5, 2026
Laboratory tests for bovine respiratory bacteria and antimicrobial resistance in commercial feedlot cattle: comparing culture, long-read metagenomics, and recombinase polymerase amplificationSimon J G Otto, Lianne McLeod, E Luke McCarthy, et al.Frontiers in Veterinary Science|February 23, 2026
Prevalences of respiratory viruses and bacteria in Western Canadian commercial feedlot calves detected using a single metagenomic sequencing protocol vary during the first two weeks of arrival and by age groupEmmanuel Donbraye, Lianne McLeod, Claire N Carson, et al.Pageof 2