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Scientific Data|February 20, 2019
The variable quality of metadata about biological samples used in biomedical experimentsRafael S Gonçalves, Mark A MusenScientific Data|December 19, 2020
Obstacles to the reuse of study metadata in ClinicalTrials.govLaura Miron, Rafael S Gonçalves, Mark A MusenGigascience|March 3, 2026
Toward total recall: Enhancing data FAIRness through AI-driven metadata standardizationSowmya S Sundaram, Rafael S Gonçalves, Mark A MusenJournal of Automated Reasoning|August 3, 2018
The OWL Reasoner Evaluation (ORE) 2015 Competition ReportBijan Parsia, Nicolas Matentzoglu, Rafael S Gonçalves, et al.Database : the Journal of Biological Databases and Curation|November 28, 2024
The text2term tool to map free-text descriptions of biomedical terms to ontologiesRafael S Gonçalves, Jason Payne, Amelia Tan, et al.Journal of Biomedical Semantics|August 3, 2017
An ontology-driven tool for structured data acquisition using Web formsRafael S Gonçalves, Samson W Tu, Csongor I Nyulas, et al.JAMIA Open|November 19, 2024
Implications of mappings between International Classification of Diseases clinical diagnosis codes and Human Phenotype Ontology termsAmelia L M Tan, Rafael S Gonçalves, William Yuan, et al.The Semantic Web--Iswc ... : ... International Semantic Web Conference ... Proceedings. International Semantic Web Conference|March 29, 2020
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific ExperimentsRafael S Gonçalves, Martin J O'Connor, Marcos Martínez-Romero, et al.ACS Omega|June 16, 2025
Design and Experimental Demonstration of Pyramidal SERS Substrates with High-Throughput Fabrication MethodFabiano C Santana, Yuri H Isayama, Rafael S Gonçalves, et al.Nucleic Acids Research|May 13, 2025
BioPortal: an open community resource for sharing, searching, and utilizing biomedical ontologiesJennifer Vendetti, Nomi L Harris, Michael V Dorf, et al.Pageof 2