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Algorithms for Molecular Biology : AMB|March 18, 2025
The open-closed mod-minimizer algorithmRagnar Groot Koerkamp, Daniel Liu, Giulio Ermanno Pibiri
Bioinformatics (Oxford, England)|June 27, 2022
Sparse and skew hashing of K-mersGiulio Ermanno Pibiri
Algorithms for Molecular Biology : AMB|June 16, 2023
On weighted k-mer dictionariesGiulio Ermanno Pibiri
Bioinformatics (Oxford, England)|July 7, 2026
Optimizing sparse and skew hashing: faster k-mer dictionariesGiulio Ermanno Pibiri, Rob Patro
Biorxiv : the Preprint Server for Biology|February 6, 2026
Optimizing sparse and skew hashing: faster <i>k</i> -mer dictionariesGiulio Ermanno Pibiri, Rob Patro
Bioinformatics (Oxford, England)|January 24, 2024
Exact global alignment using A* with chaining seed heuristic and match pruningRagnar Groot Koerkamp, Pesho Ivanov
Bioinformatics (Oxford, England)|May 24, 2026
Sassy: Fuzzy Searching DNA Sequences using SIMDRick Beeloo, Ragnar Groot Koerkamp
Biorxiv : the Preprint Server for Biology|August 7, 2023
Meta-colored compacted de Bruijn graphsGiulio Ermanno Pibiri, Jason Fan, Rob Patro
Bioinformatics (Oxford, England)|June 30, 2023
Locality-preserving minimal perfect hashing of k-mersGiulio Ermanno Pibiri, Yoshihiro Shibuya, Antoine Limasset
Biorxiv : the Preprint Server for Biology|July 19, 2024
Where the patterns are: repetition-aware compression for colored de Bruijn graphs <sup>⋆</sup>Alessio Campanelli, Giulio Ermanno Pibiri, Jason Fan, et al.
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