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Journal of Open Source Software|July 26, 2019
xml2jupyter: Mapping parameters between XML and Jupyter widgetsRandy Heiland, Daniel Mishler, Tyler Zhang, et al.
JCO Clinical Cancer Informatics|February 5, 2019
A Review of Cell-Based Computational Modeling in Cancer BiologyJohn Metzcar, Yafei Wang, Randy Heiland, et al.
PRIMUS : Problems, Resources, and Issues in Mathematics Undergraduate Studies|February 24, 2022
Supporting Computational Apprenticeship Through Educational and Software Infrastructure: A Case Study in a Mathematical Oncology Research LabAasakiran Madamanchi, Madison Thomas, Alejandra Magana, et al.
Molecular Systems Design & Engineering|September 10, 2019
Learning-accelerated discovery of immune-tumour interactionsJonathan Ozik, Nicholson Collier, Randy Heiland, et al.
Plos Computational Biology|February 24, 2018
PhysiCell: An open source physics-based cell simulator for 3-D multicellular systemsAhmadreza Ghaffarizadeh, Randy Heiland, Samuel H Friedman, et al.
Bulletin of Mathematical Biology|February 12, 2025
A Simple Framework for Agent-Based Modeling with Extracellular MatrixJohn Metzcar, Ben S Duggan, Brandon Fischer, et al.
Arxiv|July 9, 2024
Building multiscale models with PhysiBoSS, an agent-based modeling toolMarco Ruscone, Andrea Checcoli, Randy Heiland, et al.
Briefings in Bioinformatics|October 19, 2024
Building multiscale models with PhysiBoSS, an agent-based modeling toolMarco Ruscone, Andrea Checcoli, Randy Heiland, et al.
Bioinformatics (Oxford, England)|September 1, 2018
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signallingGaelle Letort, Arnau Montagud, Gautier Stoll, et al.
Biorxiv : the Preprint Server for Biology|November 14, 2023
PhysiCell Studio: a graphical tool to make agent-based modeling more accessibleRandy Heiland, Daniel Bergman, Blair Lyons, et al.
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