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Proteins|February 8, 2007
Analycys: a database for conservation and conformation of disulphide bonds in homologous protein domainsRatna R Thangudu, Priyanka Sharma, N Srinivasan, et al.BMC Structural Biology|December 30, 2008
Analysis on conservation of disulphide bonds and their structural features in homologous protein domain familiesRatna R Thangudu, Malini Manoharan, N Srinivasan, et al.Plos One|February 4, 2012
Homology inference of protein-protein interactions via conserved binding sitesManoj Tyagi, Ratna R Thangudu, Dachuan Zhang, et al.BMC Bioinformatics|July 3, 2010
Knowledge-based annotation of small molecule binding sites in proteinsRatna R Thangudu, Manoj Tyagi, Benjamin A Shoemaker, et al.The Journal of Physical Chemistry. B|June 6, 2013
Mutations in DNA-binding loop of NFAT5 transcription factor produce unique outcomes on protein-DNA binding and dynamicsMinghui Li, Benjamin A Shoemaker, Ratna R Thangudu, et al.Journal of Proteome Research|April 16, 2015
The CPTAC Data Portal: A Resource for Cancer Proteomics ResearchNathan J Edwards, Mauricio Oberti, Ratna R Thangudu, et al.Nucleic Acids Research|November 22, 2011
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteinsBenjamin A Shoemaker, Dachuan Zhang, Manoj Tyagi, et al.Nucleic Acids Research|October 22, 2009
Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sitesBenjamin A Shoemaker, Dachuan Zhang, Ratna R Thangudu, et al.Journal of the American Medical Informatics Association : JAMIA|July 24, 2025
Preparing clinical research data for artificial intelligence readiness: insights from the National Institute of Diabetes and Digestive and Kidney Diseases data centric challengeMarcin J Domagalski, Yin Lu, Alexander Pilozzi, et al.Journal of Proteome Research|May 1, 2026
Mass Spectrometric Detected Cancer Proteins as Resources for Cancer ResearchYuanyu Huang, Lijun Chen, Peter I-Fan Wu, et al.Pageof 2