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IEEE/ACM Transactions on Computational Biology and Bioinformatics|May 12, 2016
A Generalized Lattice based Probabilistic Approach for Metagenomic ClusteringManjari Jha, Raunaq Malhotra, Raj AcharyaComputational and Structural Biotechnology Journal|August 19, 2017
A random forest classifier for detecting rare variants in NGS data from viral populationsRaunaq Malhotra, Manjari Jha, Mary Poss, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|May 31, 2013
Mutant-bin: unsupervised haplotype estimation of viral population diversity without reference genomeShruthi Prabhakara, Raunaq Malhotra, Raj Acharya, et al.Plos Computational Biology|March 29, 2019
A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populationsWeiling Li, Lin Lin, Raunaq Malhotra, et al.BMC Bioinformatics|July 1, 2015
Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing dataYang Liu, Francesca Chiaromonte, Howard Ross, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|March 7, 2024
ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing DataWeiling Li, Raunaq Malhotra, Steven Wu, et al.Molecular Biology and Evolution|September 4, 2021
Recombination Marks the Evolutionary Dynamics of a Recently Endogenized RetrovirusLei Yang, Raunaq Malhotra, Rayan Chikhi, et al.Current Protocols in Bioinformatics|December 9, 2017
Using the Seven Bridges Cancer Genomics Cloud to Access and Analyze Petabytes of Cancer DataRaunaq Malhotra, Isheeta Seth, Erik Lehnert, et al.Bioinformatics (Oxford, England)|October 9, 2018
QuagmiR: a cloud-based application for isomiR big data analyticsXavier Bofill-De Ros, Kevin Chen, Susanna Chen, et al.Cancer Research|November 3, 2017
The Cancer Genomics Cloud: Collaborative, Reproducible, and Democratized-A New Paradigm in Large-Scale Computational ResearchJessica W Lau, Erik Lehnert, Anurag Sethi, et al.Pageof 2