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Genome Biology|October 10, 2024
Transipedia.org: k-mer-based exploration of large RNA sequencing datasets and application to cancer dataChloé Bessière, Haoliang Xue, Benoit Guibert, et al.Biorxiv : the Preprint Server for Biology|February 14, 2024
Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly GraphsKristen D Curry, Feiqiao Brian Yu, Summer E Vance, et al.Plos Genetics|September 17, 2019
Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genesRahulsimham Vegesna, Marta Tomaszkiewicz, Paul Medvedev, et al.Biorxiv : the Preprint Server for Biology|February 13, 2023
The omnitig framework can improve genome assembly contiguity in practiceSebastian Schmidt, Santeri Toivonen, Paul Medvedev, et al.Biorxiv : the Preprint Server for Biology|June 4, 2025
Estimation of substitution and indel rates via k -mer statisticsMahmudur Rahman Hera, Paul Medvedev, David Koslicki, et al.Plos One|September 1, 2015
Improving the Power of Structural Variation Detection by Augmenting the ReferenceJan Schröder, Santhosh Girirajan, Anthony T Papenfuss, et al.Algorithms for Molecular Biology : AMB|July 10, 2026
Estimation of substitution and indel rates via k-mer statisticsMahmudur Rahman Hera, Paul Medvedev, David Koslicki, et al.Nature Communications|November 4, 2018
Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoConKristoffer Sahlin, Marta Tomaszkiewicz, Kateryna D Makova, et al.Genome Biology and Evolution|November 15, 2023
Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great ApesMarta Tomaszkiewicz, Kristoffer Sahlin, Paul Medvedev, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 2, 2022
The Statistics of k-mers from a Sequence Undergoing a Simple Mutation Process Without Spurious MatchesAntonio Blanca, Robert S Harris, David Koslicki, et al.Pageof 14