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Molecular Biology and Evolution|September 4, 2021
Recombination Marks the Evolutionary Dynamics of a Recently Endogenized RetrovirusLei Yang, Raunaq Malhotra, Rayan Chikhi, et al.Bioinformatics (Oxford, England)|December 2, 2017
RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assemblySamarth Rangavittal, Robert S Harris, Monika Cechova, et al.Algorithms for Molecular Biology : AMB|September 18, 2013
Space-efficient and exact de Bruijn graph representation based on a Bloom filterRayan Chikhi, Guillaume RizkBioinformatics (Oxford, England)|July 29, 2022
The K-mer File Format: a standardized and compact disk representation of sets of k-mersYoann Dufresne, Teo Lemane, Pierre Marijon, et al.BMC Bioinformatics|March 27, 2012
Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computerPierre Peterlongo, Rayan ChikhiProteins|May 11, 2010
Real-time ligand binding pocket database search using local surface descriptorsRayan Chikhi, Lee Sael, Daisuke KiharaCell Systems|September 15, 2021
Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computerBarış Ekim, Bonnie Berger, Rayan ChikhiBioinformatics (Oxford, England)|October 31, 2022
k mdiff, large-scale and user-friendly differential k-mer analysesTéo Lemane, Rayan Chikhi, Pierre PeterlongoBioinformatics (Oxford, England)|January 18, 2013
DSK: k-mer counting with very low memory usageGuillaume Rizk, Dominique Lavenier, Rayan ChikhiBioinformatics (Oxford, England)|May 7, 2016
Assembly scaffolding with PE-contaminated mate-pair librariesKristoffer Sahlin, Rayan Chikhi, Lars ArvestadPageof 14