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Microbiome|November 5, 2023
decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methodsCamila Duitama González, Riccardo Vicedomini, Téo Lemane, et al.Bioinformatics (Oxford, England)|July 4, 2014
GATB: Genome Assembly & Analysis Tool BoxErwan Drezen, Guillaume Rizk, Rayan Chikhi, et al.Genome Research|March 4, 2016
A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla YMarta Tomaszkiewicz, Samarth Rangavittal, Monika Cechova, et al.Nature Computational Science|February 27, 2024
Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORATéo Lemane, Nolan Lezzoche, Julien Lecubin, et al.Nature Communications|March 6, 2026
High-quality metagenome assembly from nanopore reads with nanoMDBGGaëtan Benoit, Robert James, Sébastien Raguideau, et al.G3 (Bethesda, Md.)|September 16, 2022
Draft genome of the lowland anoa (Bubalus depressicornis) and comparison with buffalo genome assemblies (Bovidae, Bubalina)Stefano Porrelli, Michèle Gerbault-Seureau, Roberto Rozzi, et al.Plos Computational Biology|May 20, 2021
What do Eulerian and Hamiltonian cycles have to do with genome assembly?Paul Medvedev, Mihai PopBiorxiv : the Preprint Server for Biology|April 10, 2026
The gift of novelty: repeat-robust k -mer-based estimators of mutation ratesHaonan Wu, Paul MedvedevLipics : Leibniz International Proceedings in Informatics|June 4, 2024
Exact Sketch-Based Read MappingTizian Schulz, Paul MedvedevJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 4, 2009
Maximum likelihood genome assemblyPaul Medvedev, Michael BrudnoPageof 14