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Biorxiv : the Preprint Server for Biology|July 16, 2025
A k-mer-based estimator of the substitution rate between repetitive sequencesHaonan Wu, Antonio Blanca, Paul MedvedevAlgorithms for Molecular Biology : AMB|May 26, 2024
Compression algorithm for colored de Bruijn graphsAmatur Rahman, Yoann Dufresne, Paul MedvedevBriefings in Bioinformatics|June 25, 2019
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing dataLeandro Lima, Camille Marchet, Ségolène Caboche, et al.Nature Methods|October 22, 2009
Computational methods for discovering structural variation with next-generation sequencingPaul Medvedev, Monica Stanciu, Michael BrudnoBioinformatics (Oxford, England)|September 24, 2016
TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomesIlia Minkin, Son Pham, Paul MedvedevNature Methods|April 9, 2025
Efficient and robust search of microbial genomes via phylogenetic compressionKarel Břinda, Leandro Lima, Simone Pignotti, et al.BMC Bioinformatics|April 28, 2012
KISSPLICE: de-novo calling alternative splicing events from RNA-seq dataGustavo A T Sacomoto, Janice Kielbassa, Rayan Chikhi, et al.Biorxiv : the Preprint Server for Biology|May 3, 2023
Efficient and Robust Search of Microbial Genomes via Phylogenetic CompressionKarel Břinda, Leandro Lima, Simone Pignotti, et al.Biorxiv : the Preprint Server for Biology|July 28, 2023
Petascale Homology Search for Structure PredictionSewon Lee, Gyuri Kim, Eli Levy Karin, et al.Cold Spring Harbor Perspectives in Biology|February 5, 2024
Petabase-Scale Homology Search for Structure PredictionSewon Lee, Gyuri Kim, Eli Levy Karin, et al.Pageof 14