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Protein Science : a Publication of the Protein Society|October 13, 2025
Assessing scoring metrics for AlphaFold2 and AlphaFold3 protein complex predictionsLuca R Genz, Sanjana Nair, Natan Nagar, et al.Bioinformatics (Oxford, England)|October 17, 2023
PICKLUSTER: a protein-interface clustering and analysis plug-in for UCSF ChimeraXLuca R Genz, Thomas Mulvaney, Sanjana Nair, et al.Nature Communications|June 8, 2021
Assessment of protein-protein interfaces in cryo-EM derived assembliesSony Malhotra, Agnel Praveen Joseph, Jeyan Thiyagalingam, et al.Current Opinion in Structural Biology|July 24, 2017
Integrative modelling of cellular assembliesAgnel Praveen Joseph, Guido Polles, Frank Alber, et al.Journal of Molecular Biology|February 24, 2009
Inferential optimization for simultaneous fitting of multiple components into a CryoEM map of their assemblyKeren Lasker, Maya Topf, Andrej Sali, et al.Structure (London, England : 1993)|December 15, 2015
γ-TEMPy: Simultaneous Fitting of Components in 3D-EM Maps of Their Assembly Using a Genetic AlgorithmArun Prasad Pandurangan, Daven Vasishtan, Frank Alber, et al.Bioinformatics (Oxford, England)|September 8, 2018
Prediction of protein group function by iterative classification on functional relevance networkIshita K Khan, Aashish Jain, Reda Rawi, et al.Biorxiv : the Preprint Server for Biology|June 26, 2025
GLYCO-2: a Tool to Quantify Glycan Shielding of Glycosylated Proteins with Improved Data Processing and Computation SpeedMateo Reveiz, Myungjin Lee, Peter D Kwong, et al.Biorxiv : the Preprint Server for Biology|June 26, 2025
VIProDesign: Viral Protein Panel Design for Highly Variable Viruses to Evaluate Immune Responses and Identify Broadly Neutralizing AntibodiesTatsiana Bylund, Mohammed El Anbari, Andrew Schaub, et al.Journal of Chemical Information and Modeling|October 6, 2018
CRISPro: An Automated Pipeline for Protein Conformation Stabilization by ProlineReda Rawi, Chen-Hsiang Shen, Peter D Kwong, et al.Pageof 23