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The FEBS Journal|April 27, 2016
Divergent transcription and epigenetic directionality of human promotersScott A Lacadie, Mahmoud M Ibrahim, Sucheta A Gokhale, et al.
Nucleic Acids Research|October 9, 2014
Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detectionGalip Gürkan Yardımcı, Christopher L Frank, Gregory E Crawford, et al.
Genome Biology|February 23, 2019
Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modelingAslıhan Karabacak Calviello, Antje Hirsekorn, Ricardo Wurmus, et al.
Bioinformatics (Oxford, England)|November 28, 2009
Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization imagesDaniel L Mace, Nicole Varnado, Weiping Zhang, et al.
Plos Genetics|July 23, 2013
Fine time course expression analysis identifies cascades of activation and repression and maps a putative regulator of mammalian sex determinationSteven C Munger, Anirudh Natarajan, Loren L Looger, et al.
Genome Biology|September 12, 2022
Control of immediate early gene expression by CPEB4-repressor complex-mediated mRNA degradationFabian Poetz, Svetlana Lebedeva, Johanna Schott, et al.
Genome Research|July 3, 2013
Integrated detection of natural antisense transcripts using strand-specific RNA sequencing dataSong Li, Louisa M Liberman, Neelanjan Mukherjee, et al.
Nucleic Acids Research|March 24, 2017
RCAS: an RNA centric annotation system for transcriptome-wide regions of interestBora Uyar, Dilmurat Yusuf, Ricardo Wurmus, et al.
Genome Research|January 15, 2009
A transcription factor affinity-based code for mammalian transcription initiationMolly Megraw, Fernando Pereira, Shane T Jensen, et al.
RNA (New York, N.Y.)|August 20, 2004
Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identificationUwe Ohler, Soraya Yekta, Lee P Lim, et al.
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