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Biophysical Journal
|
October 1, 2022
It is in the flanks: Conformational flexibility of transcription factor binding sites
Tsu-Pei Chiu, Jinsen Li, Yibei Jiang, et al.
Current Opinion in Structural Biology
|
April 14, 2009
Nuance in the double-helix and its role in protein-DNA recognition
Remo Rohs, Sean M West, Peng Liu, et al.
Biorxiv : the Preprint Server for Biology
|
February 27, 2026
Circumventing the synthesizability problem in generative molecular design
Jesse A Weller, Jinsen Li, Yibei Jiang, et al.
Journal of Biomolecular Structure & Dynamics
|
March 18, 2010
Electrostatic interactions between arginines and the minor groove in the nucleosome
Sean M West, Remo Rohs, Richard S Mann, et al.
Nucleic Acids Research
|
October 16, 2019
DNAproDB: an expanded database and web-based tool for structural analysis of DNA-protein complexes
Jared M Sagendorf, Nicholas Markarian, Helen M Berman, et al.
Nature Communications
|
October 23, 2015
ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo
Gabriel E Zentner, Sivakanthan Kasinathan, Beibei Xin, et al.
Bioinformatics (Oxford, England)
|
February 1, 2025
DNAdesign: feature-aware in silico design of synthetic DNA through mutation
Yingfei Wang, Jinsen Li, Tsu-Pei Chiu, et al.
Nucleic Acids Research
|
October 31, 2019
TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites
Tsu-Pei Chiu, Beibei Xin, Nicholas Markarian, et al.
Nature Communications
|
June 6, 2017
Correspondence: Reply to 'DNA shape is insufficient to explain binding'
Sivakanthan Kasinathan, Gabriel E Zentner, Beibei Xin, et al.
Nature Communications
|
June 6, 2017
Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo
Gabriel E Zentner, Sivakanthan Kasinathan, Beibei Xin, et al.
Page
of 11
Search research articles
Search
Showing results (21-30 of 104) with videos related to
Sort By:
Page
of 11
Biophysical Journal
|
October 1, 2022
It is in the flanks: Conformational flexibility of transcription factor binding sites
Tsu-Pei Chiu, Jinsen Li, Yibei Jiang, et al.
Current Opinion in Structural Biology
|
April 14, 2009
Nuance in the double-helix and its role in protein-DNA recognition
Remo Rohs, Sean M West, Peng Liu, et al.
Biorxiv : the Preprint Server for Biology
|
February 27, 2026
Circumventing the synthesizability problem in generative molecular design
Jesse A Weller, Jinsen Li, Yibei Jiang, et al.
Journal of Biomolecular Structure & Dynamics
|
March 18, 2010
Electrostatic interactions between arginines and the minor groove in the nucleosome
Sean M West, Remo Rohs, Richard S Mann, et al.
Nucleic Acids Research
|
October 16, 2019
DNAproDB: an expanded database and web-based tool for structural analysis of DNA-protein complexes
Jared M Sagendorf, Nicholas Markarian, Helen M Berman, et al.
Nature Communications
|
October 23, 2015
ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo
Gabriel E Zentner, Sivakanthan Kasinathan, Beibei Xin, et al.
Bioinformatics (Oxford, England)
|
February 1, 2025
DNAdesign: feature-aware in silico design of synthetic DNA through mutation
Yingfei Wang, Jinsen Li, Tsu-Pei Chiu, et al.
Nucleic Acids Research
|
October 31, 2019
TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites
Tsu-Pei Chiu, Beibei Xin, Nicholas Markarian, et al.
Nature Communications
|
June 6, 2017
Correspondence: Reply to 'DNA shape is insufficient to explain binding'
Sivakanthan Kasinathan, Gabriel E Zentner, Beibei Xin, et al.
Nature Communications
|
June 6, 2017
Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo
Gabriel E Zentner, Sivakanthan Kasinathan, Beibei Xin, et al.
Page
of 11