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Proceedings of the National Academy of Sciences of the United States of America|August 15, 2003
Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplicationRhoda J Kinsella, David A Fitzpatrick, Christopher J Creevey, et al.Proceedings. Biological Sciences|December 24, 2004
Does a tree-like phylogeny only exist at the tips in the prokaryotes?Christopher J Creevey, David A Fitzpatrick, Gayle K Philip, et al.Molecular Biology and Evolution|October 28, 2025
Classifying Convergences in the Light of Horizontal Gene Transfer: Epaktovars and XenotypesJames O McInerneyMolecular Biology and Evolution|February 25, 2026
Genomic Perplexity and the Evolution of Context-Dependent FunctionJames O McInerneyTrends in Ecology & Evolution|September 17, 2013
More than tree dimensions: inter-lineage evolution's ecological importanceJames O McInerneyMolecular Biology and Evolution|October 26, 2022
Prokaryotic Pangenomes Act as Evolving EcosystemsJames O McInerneyTrends in Ecology & Evolution|May 16, 2006
The causes of protein evolutionary rate variationJames O McInerneyMolecular Biology and Evolution|July 26, 2013
Translational selection frequently overcomes genetic drift in shaping synonymous codon usage patterns in vertebratesAoife Doherty, James O McInerneyGenes|August 31, 2019
Eukaryote Genes Are More Likely than Prokaryote Genes to Be CompositesYaqing Ou, James O McInerneyTrends in Ecology & Evolution|May 17, 2006
New methods ring changes for the tree of lifeJames O McInerney, Mark WilkinsonPageof 8