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BMC Bioinformatics|September 1, 2018
Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software toolsAdeola M Rotimi, Rian Pierneef, Oleg N Reva
BMC Microbiology|April 24, 2025
Antibiotic resistance profiles and mutations that might affect drug susceptibility in metagenome-assembled genomes of Legionella pneumophila and Aeromonas species from municipal wastewaterEvida Poopedi, Rian Pierneef, Tanusha Singh, et al.
Scientific Reports|March 26, 2025
Opportunistic bacterial pathogens in bioaerosols emitted at municipal wastewater treatment plants, South AfricaEvida Poopedi, Rian Pierneef, Tanusha Singh, et al.
Microbiology Resource Announcements|August 1, 2023
Genome sequence of an indole-3-acetic acid and siderophores producing Pseudomonas monsensis SARCC-3054 with the potential as a microbial inoculant for enhanced crop productionAhmed Idris Hassen, Langutani Sanger Khambani, Rian Pierneef
Database : the Journal of Biological Databases and Curation|July 23, 2015
Pre_GI: a global map of ontological links between horizontally transferred genomic islands in bacterial and archaeal genomesRian Pierneef, Louis Cronje, Oliver Bezuidt, et al.
Frontiers in Microbiology|February 19, 2025
Profiling the diversity of the village chicken faecal microbiota using 16S rRNA gene and metagenomic sequencing data to reveal patterns of gut microbiome signaturesMxolisi Nene, Nokuthula Winfred Kunene, Rian Pierneef, et al.
Frontiers in Microbiology|October 21, 2021
Genomic Characterization of Endemic and Ecdemic Non-typhoidal Salmonella enterica Lineages Circulating Among Animals and Animal Products in South AfricaLaura M Carroll, Rian Pierneef, Masenyabu Mathole, et al.
Genomics|June 16, 2026
Shifting genomes, rising threats: Adaptive evolution and antimicrobial resistance of E. coli ST10 across African ecologiesRefiloe Malesa, Rian Pierneef, Kudakwashe Magwedere, et al.
Microbiology Spectrum|April 27, 2022
Genomic Sequencing of Bacillus cereus Sensu Lato Strains Isolated from Meat and Poultry Products in South Africa Enables Inter- and Intranational Surveillance and Source TrackingLaura M Carroll, Rian Pierneef, Aletta Mathole, et al.
Genes|December 11, 2019
Genomic Diversity of Common Sequence Types of Listeria monocytogenes Isolated from Ready-to-Eat Products of Animal Origin in South AfricaItumeleng Matle, Rian Pierneef, Khanyisile R Mbatha, et al.
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