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NPJ Digital Medicine
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May 5, 2025
Enhancing biomarker based oncology trial matching using large language models
Nour Alkhoury, Maqsood Shaik, Ricardo Wurmus, et al.
Nucleic Acids Research
|
March 24, 2017
RCAS: an RNA centric annotation system for transcriptome-wide regions of interest
Bora Uyar, Dilmurat Yusuf, Ricardo Wurmus, et al.
Genome Biology
|
February 23, 2019
Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling
Aslıhan Karabacak Calviello, Antje Hirsekorn, Ricardo Wurmus, et al.
Nucleic Acids Research
|
November 23, 2014
DoRiNA 2.0--upgrading the doRiNA database of RNA interactions in post-transcriptional regulation
Kai Blin, Christoph Dieterich, Ricardo Wurmus, et al.
Nucleic Acids Research
|
May 23, 2019
HOT or not: examining the basis of high-occupancy target regions
Katarzyna Wreczycka, Vedran Franke, Bora Uyar, et al.
Nature Communications
|
April 11, 2019
Global identification of functional microRNA-mRNA interactions in Drosophila
Hans-Hermann Wessels, Svetlana Lebedeva, Antje Hirsekorn, et al.
Gigascience
|
October 3, 2018
PiGx: reproducible genomics analysis pipelines with GNU Guix
Ricardo Wurmus, Bora Uyar, Brendan Osberg, et al.
Nature Communications
|
September 12, 2025
Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond
Bora Uyar, Taras Savchyn, Amirhossein Naghsh Nilchi, et al.
Methods in Molecular Biology (Clifton, N.J.)
|
July 7, 2019
Scalable Workflows and Reproducible Data Analysis for Genomics
Francesco Strozzi, Roel Janssen, Ricardo Wurmus, et al.
Nature Methods
|
September 22, 2023
Spatiotemporal, optogenetic control of gene expression in organoids
Ivano Legnini, Lisa Emmenegger, Alessandra Zappulo, et al.
Page
of 2
Search research articles
Search
Showing results (1-10 of 11) with videos related to
Sort By:
Page
of 2
NPJ Digital Medicine
|
May 5, 2025
Enhancing biomarker based oncology trial matching using large language models
Nour Alkhoury, Maqsood Shaik, Ricardo Wurmus, et al.
Nucleic Acids Research
|
March 24, 2017
RCAS: an RNA centric annotation system for transcriptome-wide regions of interest
Bora Uyar, Dilmurat Yusuf, Ricardo Wurmus, et al.
Genome Biology
|
February 23, 2019
Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling
Aslıhan Karabacak Calviello, Antje Hirsekorn, Ricardo Wurmus, et al.
Nucleic Acids Research
|
November 23, 2014
DoRiNA 2.0--upgrading the doRiNA database of RNA interactions in post-transcriptional regulation
Kai Blin, Christoph Dieterich, Ricardo Wurmus, et al.
Nucleic Acids Research
|
May 23, 2019
HOT or not: examining the basis of high-occupancy target regions
Katarzyna Wreczycka, Vedran Franke, Bora Uyar, et al.
Nature Communications
|
April 11, 2019
Global identification of functional microRNA-mRNA interactions in Drosophila
Hans-Hermann Wessels, Svetlana Lebedeva, Antje Hirsekorn, et al.
Gigascience
|
October 3, 2018
PiGx: reproducible genomics analysis pipelines with GNU Guix
Ricardo Wurmus, Bora Uyar, Brendan Osberg, et al.
Nature Communications
|
September 12, 2025
Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond
Bora Uyar, Taras Savchyn, Amirhossein Naghsh Nilchi, et al.
Methods in Molecular Biology (Clifton, N.J.)
|
July 7, 2019
Scalable Workflows and Reproducible Data Analysis for Genomics
Francesco Strozzi, Roel Janssen, Ricardo Wurmus, et al.
Nature Methods
|
September 22, 2023
Spatiotemporal, optogenetic control of gene expression in organoids
Ivano Legnini, Lisa Emmenegger, Alessandra Zappulo, et al.
Page
of 2