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Plos Computational Biology|October 12, 2023
Assessing the performance of methods for cell clustering from single-cell DNA sequencing dataRituparna Khan, Xian Mallory
Biorxiv : the Preprint Server for Biology|April 17, 2026
scLongTree: an accurate computational tool to infer the longitudinal tree for scDNAseq dataRituparna Khan, Pankaj Bhattarai, Liting Zhang, et al.
Biorxiv : the Preprint Server for Biology|February 20, 2025
SCGclust: Single Cell Graph clustering using graph autoencoders integrating SNVs and CNAsTeja Potu, Yunfei Hu, Rituparna Khan, et al.
Bioinformatics (Oxford, England)|July 27, 2024
SCCNAInfer: a robust and accurate tool to infer the absolute copy number on scDNA-seq dataLiting Zhang, Xin Maizie Zhou, Xian Mallory
Genome Research|November 22, 2023
Integrating SNVs and CNAs on a phylogenetic tree from single-cell DNA sequencing dataLiting Zhang, Hank W Bass, Jerome Irianto, et al.
Analytical Chemistry|January 15, 2026
Mass-Invariant Natural Log-Transformed Mass Spectra Enable Internal Calibration and <i>De Novo</i> Sequencing of Intact ProteinsLissa C Anderson, Nathan K Kaiser, Krishna Saketh Kamadana, et al.
Biorxiv : the Preprint Server for Biology|July 10, 2026
Multi-modality Graph Representation Learning for Malignant Cell Identification from scRNA-seq using DeepMalignantPankaj Bhattarai, Weiman Yuan, Hongmei Chi, et al.
Environmental Science and Pollution Research International|September 1, 2023
Spatio-temporal assessment of water quality of a tropical decaying river in India for drinking purposes and human health risk characterizationMd Mofizul Hoque, Aznarul Islam, Abu Reza Md Towfiqul Islam, et al.
NPJ Genomic Medicine|December 19, 2022
Genomic heterogeneity in pancreatic cancer organoids and its stability with cultureOlalekan H Usman, Liting Zhang, Gengqiang Xie, et al.
Pancreas|May 6, 2024
Phenotypic, Genomic, and Transcriptomic Heterogeneity in a Pancreatic Cancer Cell LineGengqiang Xie, Liting Zhang, Olalekan H Usman, et al.
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