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Genome Biology|January 8, 2024
GTax: improving de novo transcriptome assembly by removing foreign RNA contaminationRoberto Vera Alvarez, David Landsman
Gigascience|January 29, 2021
Transcriptome annotation in the cloud: complexity, best practices, and costRoberto Vera Alvarez, Leonardo Mariño-Ramírez, David Landsman
Bioinformatics (Oxford, England)|October 3, 2017
SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genomeRoberto Vera Alvarez, Shan Li, David Landsman, et al.
Gigascience|January 7, 2021
PM4NGS, a project management framework for next-generation sequencing data analysisRoberto Vera Alvarez, Lorinc Pongor, Leonardo Mariño-Ramírez, et al.
Bioinformatics (Oxford, England)|November 1, 2018
TPMCalculator: one-step software to quantify mRNA abundance of genomic featuresRoberto Vera Alvarez, Lorinc Sandor Pongor, Leonardo Mariño-Ramírez, et al.
Nucleic Acids Research|December 17, 2016
Quantifying deleterious effects of regulatory variantsShan Li, Roberto Vera Alvarez, Roded Sharan, et al.
Nucleic Acids Research|November 9, 2020
COG database update: focus on microbial diversity, model organisms, and widespread pathogensMichael Y Galperin, Yuri I Wolf, Kira S Makarova, et al.
BMC Genomics|May 16, 2019
Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006Rocío M Gamez, Fernando Rodríguez, Newton Medeiros Vidal, et al.
Database : the Journal of Biological Databases and Curation|June 13, 2017
Workflow and web application for annotating NCBI BioProject transcriptome dataRoberto Vera Alvarez, Newton Medeiros Vidal, Gina A Garzón-Martínez, et al.
Nucleic Acids Research|November 4, 2024
COG database update 2024Michael Y Galperin, Roberto Vera Alvarez, Svetlana Karamycheva, et al.
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