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BMC Bioinformatics|July 9, 2024
ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencingRobin Jugas, Helena Vitkova
Computational and Structural Biotechnology Journal|April 16, 2019
A degeneration-reducing criterion for optimal digital mapping of genetic codesHelena Skutkova, Denisa Maderankova, Karel Sedlar, et al.
Computational and Structural Biotechnology Journal|February 8, 2019
Rapid Bacterial Species Delineation Based on Parameters Derived From Genome Numerical RepresentationsDenisa Maderankova, Robin Jugas, Karel Sedlar, et al.
Frontiers in Microbiology|March 6, 2026
Basecalling-free resistance gene identification using a hybrid transformer in raw nanopore signalsRoman Jakubicek, Jevhenij Vorochta, Marketa Jakubickova, et al.
Computational and Structural Biotechnology Journal|January 16, 2026
MethylomeMiner: A novel tool for high-resolution analysis of bacterial methylation patterns from nanopore sequencingMarketa Jakubickova, Katerina Sabatova, Michaela Zbudilova, et al.
Data in Brief|July 8, 2024
Dataset of DNA methylation profiles of 189 pediatric central nervous system, soft tissue, and bone tumorsRobin Jugas, Petra Pokorna, Sona Adamcova, et al.
Genomics|July 5, 2021
CNproScan: Hybrid CNV detection for bacterial genomesRobin Jugas, Karel Sedlar, Martin Vitek, et al.
Frontiers in Microbiology|February 18, 2026
Emergence and genomic characterization of hypervirulent ST23/K1 <i>Klebsiella pneumoniae</i>: local epidemiology and global contextMatej Bezdicek, Marketa Jakubickova, Viktoria Bitusikova, et al.
BMC Cancer|March 28, 2025
Analysis of extracellular vesicles of frequently used colorectal cancer cell linesMarie Boudná, Nicolas Blavet, Tetiana Samoilenko, et al.
Clinical Chemistry and Laboratory Medicine|July 28, 2023
Optimized procedure for high-throughput transcriptome profiling of small extracellular vesicles isolated from low volume serum samplesPetra Vychytilova-Faltejskova, Sara Vilmanova, Lucie Pifkova, et al.
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