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Bioinformatics (Oxford, England)|September 30, 2020
Fijiyama: a registration tool for 3D multimodal time-lapse imagingRomain Fernandez, Cédric MoisyPlant Methods|December 2, 2022
High-throughput and automatic structural and developmental root phenotyping on Arabidopsis seedlingsRomain Fernandez, Amandine Crabos, Morgan Maillard, et al.Plant Methods|December 9, 2022
PhenoTrack3D: an automatic high-throughput phenotyping pipeline to track maize organs over timeBenoit Daviet, Romain Fernandez, Llorenç Cabrera-Bosquet, et al.Functional Plant Biology : FPB|November 20, 2025
Exploring the relationship between environmental origin, phylogenetic relatedness and root system architecture (RSA) in wild lentil speciesSalma Rouichi, Romain Fernandez, Alain Audebert, et al.Nature Methods|June 15, 2010
Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolutionRomain Fernandez, Pradeep Das, Vincent Mirabet, et al.Plant Phenomics (Washington, D.C.)|July 1, 2026
Atlas-based spatiotemporal MRI phenotyping of 3D fungal spread in grapevine woodGargee Phukon, Maïda Cardoso, Christophe Goze-Bac, et al.Plant Methods|July 1, 2026
Deep aerenchyma: a transformer-based pipeline for scalable phenotyping of rice root aerenchyma lacunae across environmentsHani Atef, Laura Fierro-Dominguez, Paula Andrea Lozano-Montaña, et al.Scientific Reports|February 29, 2024
End-to-end multimodal 3D imaging and machine learning workflow for non-destructive phenotyping of grapevine trunk internal structureRomain Fernandez, Loïc Le Cunff, Samuel Mérigeaud, et al.Marine Environmental Research|September 11, 2024
Barau's petrel, Pterodroma baraui, as a bioindicator of plastic pollution in the South-West Indian Ocean: A multifaceted approachMargot Thibault, Lisa Weiss, Romain Fernandez, et al.Pageof 1