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Genes|December 30, 2020
RNA Secondary Structures with Limited Base Pair Span: Exact Backtracking and an ApplicationRonny Lorenz, Peter F StadlerAlgorithms for Molecular Biology : AMB|April 26, 2016
RNA folding with hard and soft constraintsRonny Lorenz, Ivo L Hofacker, Peter F StadlerAdvances in Experimental Medicine and Biology|August 31, 2025
Prediction of Circular RNA Secondary Structures and Their TargetsStephan H Bernhart, Jörg Fallmann, Ronny Lorenz, et al.Algorithms for Molecular Biology : AMB|July 29, 2023
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA packageHua-Ting Yao, Ronny Lorenz, Ivo L Hofacker, et al.Bioinformatics (Oxford, England)|September 11, 2015
SHAPE directed RNA foldingRonny Lorenz, Dominik Luntzer, Ivo L Hofacker, et al.BMC Bioinformatics|March 29, 2014
TSSAR: TSS annotation regime for dRNA-seq dataFabian Amman, Michael T Wolfinger, Ronny Lorenz, et al.RNA Biology|April 1, 2015
Design criteria for synthetic riboswitches acting on transcriptionManja Wachsmuth, Gesine Domin, Ronny Lorenz, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 27, 2024
Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure PredictionSarah von Löhneysen, Thomas Spicher, Yuliia Varenyk, et al.Journal of Bioinformatics and Computational Biology|July 31, 2023
Local RNA folding revisitedMaria Waldl, Thomas Spicher, Ronny Lorenz, et al.Algorithms for Molecular Biology : AMB|November 26, 2011
ViennaRNA Package 2.0Ronny Lorenz, Stephan H Bernhart, Christian Höner Zu Siederdissen, et al.Pageof 48