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Current Opinion in Structural Biology|April 28, 2009
Nothing about protein structure classification makes sense except in the light of evolutionRuben E Valas, Song Yang, Philip E BourneBiology Direct|March 2, 2011
The origin of a derived superkingdom: how a gram-positive bacterium crossed the desert to become an archaeonRuben E Valas, Philip E BourneBiology Direct|July 3, 2010
Save the tree of life or get lost in the woodsRuben E Valas, Philip E BourneJournal of Molecular Evolution|April 5, 2008
Rethinking proteasome evolution: two novel bacterial proteasomesRuben E Valas, Philip E BourneBiology Direct|August 27, 2009
Structural analysis of polarizing indels: an emerging consensus on the root of the tree of lifeRuben E Valas, Philip E BournePlos Computational Biology|March 14, 2009
Sm/Lsm genes provide a glimpse into the early evolution of the spliceosomeStella Veretnik, Christopher Wills, Philippe Youkharibache, et al.Proceedings of the National Academy of Sciences of the United States of America|May 26, 2010
History of biological metal utilization inferred through phylogenomic analysis of protein structuresChristopher L Dupont, Andrew Butcher, Ruben E Valas, et al.Plos One|December 31, 2009
The evolutionary history of protein domains viewed by species phylogenySong Yang, Philip E BourneProceedings of the National Academy of Sciences of the United States of America|January 5, 2005
Phylogeny determined by protein domain contentSong Yang, Russell F Doolittle, Philip E BourneProceedings of the National Academy of Sciences of the United States of America|November 14, 2006
Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistryChristopher L Dupont, Song Yang, Brian Palenik, et al.Pageof 208