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Biorxiv : the Preprint Server for Biology|July 17, 2026
Benchmarking AlphaFold and related deep learning approaches for modeling antibody and TCR antigen recognitionRui Yin, Shayana Saravanakumar, Shu Yuan Shi, et al.The Journal of Biological Chemistry|May 23, 2025
Evaluation of AlphaFold modeling for elucidation of nanobody-peptide epitope interactionsShivani Sachdev, Swarnali Roy, Shubhra J Saha, et al.Frontiers in Immunology|December 4, 2023
Structural basis for T cell recognition of cancer neoantigens and implications for predicting neoepitope immunogenicityRoy A Mariuzza, Daichao Wu, Brian G PierceCurrent Opinion in Virology|September 23, 2016
Viral evasion and challenges of hepatitis C virus vaccine developmentBrian G Pierce, Zhen-Yong Keck, Steven Kh FoungProtein Science : a Publication of the Protein Society|January 13, 2012
Prediction of protein-protein binding free energiesThom Vreven, Howook Hwang, Brian G Pierce, et al.Briefings in Bioinformatics|July 3, 2013
Evaluating template-based and template-free protein-protein complex structure predictionThom Vreven, Howook Hwang, Brian G Pierce, et al.Nature Communications|January 11, 2022
Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptorsDaichao Wu, Alexander Kolesnikov, Rui Yin, et al.Nucleic Acids Research|May 20, 2024
Proscan: a structure-based proline design web serverNathaniel Felbinger, Helder V Ribeiro-Filho, Brian G PierceProteins|October 15, 2013
Performance of ZDOCK in CAPRI rounds 20-26Thom Vreven, Brian G Pierce, Howook Hwang, et al.Biochemistry|August 5, 2010
Combinations of affinity-enhancing mutations in a T cell receptor reveal highly nonadditive effects within and between complementarity determining regions and chainsBrian G Pierce, Jaafar N Haidar, Yong Yu, et al.Pageof 55