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IEEE/ACM Transactions on Computational Biology and Bioinformatics|June 28, 2024
Tropical Density Estimation of Phylogenetic TreesRuriko Yoshida, David Barnhill, Keiji Miura, et al.Neural Networks : the Official Journal of the International Neural Network Society|November 5, 2022
Tropical support vector machines: Evaluations and extension to function spacesRuriko Yoshida, Misaki Takamori, Hideyuki Matsumoto, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|January 24, 2017
Normalizing Kernels in the Billera-Holmes-Vogtmann TreespaceGrady Weyenberg, Ruriko Yoshida, Daniel HoweNeural Networks : the Official Journal of the International Neural Network Society|January 30, 2026
Adversarially robust neural network decision boundaries via tropical geometryKurt Pasque, Christopher Teska, Ruriko Yoshida, et al.Molecular Biology and Evolution|March 2, 2016
Efficiencies of the NJp, Maximum Likelihood, and Bayesian Methods of Phylogenetic Construction for Compositional and Noncompositional GenesRuriko Yoshida, Masatoshi NeiFrontiers in Psychiatry|March 23, 2011
Statistical Analysis on Detecting Recombination Sites in DNA-β Satellites Associated with Old World GeminivirusesKai Xu, Ruriko YoshidaBioinformatics (Oxford, England)|June 10, 2020
Tropical principal component analysis on the space of phylogenetic treesRobert Page, Ruriko Yoshida, Leon ZhangMolecular Biology and Evolution|November 11, 2005
Beyond pairwise distances: neighbor-joining with phylogenetic diversity estimatesDan Levy, Ruriko Yoshida, Lior PachterBulletin of Mathematical Biology|September 13, 2018
Tropical Principal Component Analysis and Its Application to PhylogeneticsRuriko Yoshida, Leon Zhang, Xu ZhangPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|September 28, 2004
Pulse-coupled resonate-and-fire modelsKeiji Miura, Masato OkadaPageof 5