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Journal of Chemical Information and Modeling|December 15, 2018
Robustness and Efficiency of Poisson-Boltzmann Modeling on Graphics Processing UnitsRuxi Qi, Ray LuoJournal of Computational Chemistry|February 19, 2019
An efficient second-order poisson-boltzmann methodHaixin Wei, Ray Luo, Ruxi QiJournal of Chemical Theory and Computation|May 30, 2017
Acceleration of Linear Finite-Difference Poisson-Boltzmann Methods on Graphics Processing UnitsRuxi Qi, Wesley M Botello-Smith, Ray LuoJournal of Chemical Theory and Computation|March 25, 2021
Estimating the Roles of Protonation and Electronic Polarization in Absolute Binding Affinity SimulationsEdward King, Ruxi Qi, Han Li, et al.Journal of Chemical Information and Modeling|May 31, 2019
Heterogeneous Dielectric Implicit Membrane Model for the Calculation of MMPBSA Binding Free EnergiesD'Artagnan Greene, Ruxi Qi, Remy Nguyen, et al.Frontiers in Molecular Biosciences|January 26, 2018
Recent Developments and Applications of the MMPBSA MethodChanghao Wang, D'Artagnan Greene, Li Xiao, et al.Journal of Chemical Theory and Computation|September 19, 2019
Improved Poisson-Boltzmann Methods for High-Performance ComputingHaixin Wei, Aaron Luo, Tianyin Qiu, et al.The Journal of Chemical Physics|September 23, 2020
Efficient formulation of polarizable Gaussian multipole electrostatics for biomolecular simulationsHaixin Wei, Ruxi Qi, Junmei Wang, et al.Molecular Cell|October 9, 2018
Regulation of the Hippo Pathway by Phosphatidic Acid-Mediated Lipid-Protein InteractionHan Han, Ruxi Qi, Jeff Jiajing Zhou, et al.Methods in Molecular Biology (Clifton, N.J.)|May 11, 2018
Replica Exchange Molecular Dynamics: A Practical Application Protocol with Solutions to Common Problems and a Peptide Aggregation and Self-Assembly ExampleRuxi Qi, Guanghong Wei, Buyong Ma, et al.Pageof 17