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Nature Biotechnology|May 7, 2005
Systematic interpretation of genetic interactions using protein networksRyan Kelley, Trey IdekerPlos Genetics|June 9, 2009
Genome-wide fitness and expression profiling implicate Mga2 in adaptation to hydrogen peroxideRyan Kelley, Trey IdekerPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|November 11, 2006
Discovering regulated networks during HIV-1 latency and reactivationSourav Bandyopadhyay, Ryan Kelley, Trey IdekerBioinformatics (Oxford, England)|July 12, 2007
Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihoodRyan Kelley, Hoda Feizi, Trey IdekerPlos Computational Biology|April 19, 2008
Functional maps of protein complexes from quantitative genetic interaction dataSourav Bandyopadhyay, Ryan Kelley, Nevan J Krogan, et al.Advances in Experimental Medicine and Biology|July 3, 2004
A systems approach to discovering signaling and regulatory pathways--or, how to digest large interaction networks into relevant piecesTrey IdekerPlos Computational Biology|October 8, 2011
Protein networks as logic functions in development and cancerJanusz Dutkowski, Trey IdekerNature Biotechnology|April 8, 2006
Modeling cellular machinery through biological network comparisonRoded Sharan, Trey IdekerPageof 32