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Methods in Enzymology|September 25, 2013
Sample handling and mass spectrometry for microbial metaproteomic analysesRyan S Mueller, Chongle PanAnalytical Chemistry|October 28, 2025
Aerith: Visualization and Annotation of Isotopic Enrichment Patterns of Peptides and Metabolites with Stable Isotope Labeling from Proteomics and MetabolomicsYi Xiong, Ryan S Mueller, Shichao Feng, et al.Microbiome|August 8, 2024
Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteinsYi Xiong, Ryan S Mueller, Shichao Feng, et al.Proceedings of the National Academy of Sciences of the United States of America|October 8, 2021
Phytoplankton exudates and lysates support distinct microbial consortia with specialized metabolic and ecophysiological traitsBrandon Kieft, Zhou Li, Samuel Bryson, et al.Msystems|November 9, 2016
Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine BacterioplanktonSamuel Bryson, Zhou Li, Jennifer Pett-Ridge, et al.Nature Communications|June 21, 2022
Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomesLi Zhang, Karen R Jonscher, Zuyuan Zhang, et al.Plos One|December 24, 2011
Measuring dissociation rate constants of protein complexes through subunit exchange: experimental design and theoretical modelingChongle PanFrontiers in Microbiology|July 3, 2018
Microbial Community Structure-Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling CapacitiesBrandon Kieft, Zhou Li, Samuel Bryson, et al.Bioinformatics (Oxford, England)|October 14, 2017
Sipros Ensemble improves database searching and filtering for complex metaproteomicsXuan Guo, Zhou Li, Qiuming Yao, et al.Genome Announcements|May 2, 2015
Metagenome sequencing of a coastal marine microbial community from monterey bay, californiaRyan S Mueller, Sam Bryson, Brandon Kieft, et al.Pageof 15