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Frontiers in Physiology
|
September 26, 2022
A thermodynamically consistent monte carlo cross-bridge model with a trapping mechanism reveals the role of stretch activation in heart pumping
Kazunori Yoneda, Ryo Kanada, Jun-Ichi Okada, et al.
Journal of Chemical Information and Modeling
|
May 30, 2020
Coarse-Grained Diffraction Template Matching Model to Retrieve Multiconformational Models for Biomolecule Structures from Noisy Diffraction Patterns
Atsushi Tokuhisa, Ryo Kanada, Shuntaro Chiba, et al.
ACS Chemical Neuroscience
|
January 4, 2020
Stabilization Mechanism for a Nonfibrillar Amyloid β Oligomer Based on Formation of a Hydrophobic Core Determined by Dissipative Particle Dynamics
Ryoko Kawai, Shuntaro Chiba, Koji Okuwaki, et al.
Journal of Chemical Theory and Computation
|
November 25, 2015
CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work
Hiroo Kenzaki, Nobuyasu Koga, Naoto Hori, et al.
The Journal of Biological Chemistry
|
August 2, 2025
Conversion of an agonistic anti-TNFR2 biparatopic antibody into an antagonist by insertion of peptide linkers into the hinge region
Takuya Otsuki, Shigeyuki Matsumoto, Junso Fujita, et al.
The Journal of Cell Biology
|
April 29, 2025
Tension-induced suppression of allosteric conformational changes coordinates kinesin-1 stepping
Tsukasa Makino, Ryo Kanada, Teppei Mori, et al.
Journal of Chemical Theory and Computation
|
December 26, 2023
Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model
Ryo Kanada, Atsushi Tokuhisa, Yusuke Nagasaka, et al.
Journal of Computational Chemistry
|
June 9, 2022
Protein-ligand binding affinity prediction of cyclin-dependent kinase-2 inhibitors by dynamically averaged fragment molecular orbital-based interaction energy
Kenichiro Takaba, Chiduru Watanabe, Atsushi Tokuhisa, et al.
The Journal of Biological Chemistry
|
December 27, 2024
Receptor-independent regulation of Gα13 by alpha-1-antitrypsin C-terminal peptides
Yonghak Park, Shigeyuki Matsumoto, Kosuke Ogata, et al.
PNAS Nexus
|
March 31, 2025
Precision spatiotemporal analysis of large-scale compound-protein interactions through molecular dynamics simulation
Shigeyuki Matsumoto, Yuta Isaka, Ryo Kanada, et al.
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Search research articles
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Showing results (11-20 of 24) with videos related to
Sort By:
Page
of 3
Frontiers in Physiology
|
September 26, 2022
A thermodynamically consistent monte carlo cross-bridge model with a trapping mechanism reveals the role of stretch activation in heart pumping
Kazunori Yoneda, Ryo Kanada, Jun-Ichi Okada, et al.
Journal of Chemical Information and Modeling
|
May 30, 2020
Coarse-Grained Diffraction Template Matching Model to Retrieve Multiconformational Models for Biomolecule Structures from Noisy Diffraction Patterns
Atsushi Tokuhisa, Ryo Kanada, Shuntaro Chiba, et al.
ACS Chemical Neuroscience
|
January 4, 2020
Stabilization Mechanism for a Nonfibrillar Amyloid β Oligomer Based on Formation of a Hydrophobic Core Determined by Dissipative Particle Dynamics
Ryoko Kawai, Shuntaro Chiba, Koji Okuwaki, et al.
Journal of Chemical Theory and Computation
|
November 25, 2015
CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work
Hiroo Kenzaki, Nobuyasu Koga, Naoto Hori, et al.
The Journal of Biological Chemistry
|
August 2, 2025
Conversion of an agonistic anti-TNFR2 biparatopic antibody into an antagonist by insertion of peptide linkers into the hinge region
Takuya Otsuki, Shigeyuki Matsumoto, Junso Fujita, et al.
The Journal of Cell Biology
|
April 29, 2025
Tension-induced suppression of allosteric conformational changes coordinates kinesin-1 stepping
Tsukasa Makino, Ryo Kanada, Teppei Mori, et al.
Journal of Chemical Theory and Computation
|
December 26, 2023
Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model
Ryo Kanada, Atsushi Tokuhisa, Yusuke Nagasaka, et al.
Journal of Computational Chemistry
|
June 9, 2022
Protein-ligand binding affinity prediction of cyclin-dependent kinase-2 inhibitors by dynamically averaged fragment molecular orbital-based interaction energy
Kenichiro Takaba, Chiduru Watanabe, Atsushi Tokuhisa, et al.
The Journal of Biological Chemistry
|
December 27, 2024
Receptor-independent regulation of Gα13 by alpha-1-antitrypsin C-terminal peptides
Yonghak Park, Shigeyuki Matsumoto, Kosuke Ogata, et al.
PNAS Nexus
|
March 31, 2025
Precision spatiotemporal analysis of large-scale compound-protein interactions through molecular dynamics simulation
Shigeyuki Matsumoto, Yuta Isaka, Ryo Kanada, et al.
Page
of 3