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The Journal of Physical Chemistry Letters|December 26, 2025
Molecular Insight into the Hepatitis B Virus: Coarse-Grained Simulations of the Envelope-Capsid ComplexRyo Urano, Wataru ShinodaJournal of Chemical Information and Modeling|June 9, 2026
Synergistic Protein-Protein and Protein-Lipid Interactions Drive SARS-CoV-2 Envelope AssemblyRyo Urano, Shogo Yoshimoto, Katsutoshi Hori, et al.The Journal of Chemical Physics|July 3, 2020
Exact long-range Coulombic energy calculation for net charged systems neutralized by uniformly distributed background charge using fast multipole method and its application to efficient free energy calculationRyo Urano, Wataru Shinoda, Noriyuki Yoshii, et al.Journal of Chemical Theory and Computation|November 30, 2020
Position-Dependent Diffusion Constant of Molecules in Heterogeneous Systems as Evaluated by the Local Mean Squared DisplacementTetsuro Nagai, Shuhei Tsurumaki, Ryo Urano, et al.The Journal of Chemical Physics|October 16, 2021
All-atom molecular dynamics study of hepatitis B virus containing pregenome RNA in solutionKazushi Fujimoto, Youhei Yamaguchi, Ryo Urano, et al.Proceedings of the National Academy of Sciences of the United States of America|August 5, 2025
Structural insights into a citrate transporter that mediates aluminum tolerance in barleyTran Nguyen Thao, Namiki Mitani-Ueno, Ryo Urano, et al.Soft Matter|April 4, 2014
Free energy analysis along the stalk mechanism of membrane fusionShuhei Kawamoto, Wataru ShinodaBiochimica Et Biophysica Acta. Biomembranes|May 8, 2022
Cooperative antimicrobial action of melittin on lipid membranes: A coarse-grained molecular dynamics studyYusuke Miyazaki, Wataru ShinodaJournal of Chemical Theory and Computation|December 6, 2018
SPICA Force Field for Lipid Membranes: Domain Formation Induced by CholesterolSangjae Seo, Wataru ShinodaPageof 12