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Science (New York, N.Y.)|August 9, 2008
Large-scale molecular dynamics simulations of self-assembling systemsMichael L Klein, Wataru ShinodaJournal of Chemical Information and Modeling|August 10, 2019
tSPICA: Temperature- and Pressure-Dependent Coarse-Grained Force Field for Organic MoleculesMark Z Griffiths, Wataru ShinodaPhysical Chemistry Chemical Physics : PCCP|January 24, 2007
Molecular dynamics simulation of an archaeal lipid bilayer with sodium chlorideKeiko Shinoda, Wataru Shinoda, Masuhiro MikamiThe Journal of Chemical Physics|September 15, 2011
Novel numerical method for calculating the pressure tensor in spherical coordinates for molecular systemsTakenobu Nakamura, Wataru Shinoda, Tamio IkeshojiThe Journal of Physical Chemistry. B|August 20, 2008
Enhanced hydrophobicity of fluorinated lipid bilayer: a molecular dynamics studyHiroaki Saito, Wataru Shinoda, Masuhiro MikamiThe Journal of Chemical Physics|May 27, 2008
Free-energy analysis of the molecular binding into lipid membrane with the method of energy representationNobuyuki Matubayasi, Wataru Shinoda, Masaru NakaharaBiochimica Et Biophysica Acta. Biomembranes|March 20, 2019
Free energy analysis of membrane pore formation process in the presence of multiple melittin peptidesYusuke Miyazaki, Susumu Okazaki, Wataru ShinodaJournal of Computational Chemistry|March 28, 2008
Efficient free energy calculation of water across lipid membranesKeiko Shinoda, Wataru Shinoda, Masuhiro MikamiJournal of Chemical Theory and Computation|November 22, 2019
pSPICA: A Coarse-Grained Force Field for Lipid Membranes Based on a Polar Water ModelYusuke Miyazaki, Susumu Okazaki, Wataru ShinodaJournal of Chemical Information and Modeling|November 23, 2019
Heteroaryldihydropyrimidines Alter Capsid Assembly By Adjusting the Binding Affinity and Pattern of the Hepatitis B Virus Core ProteinHuihui Liu, Susumu Okazaki, Wataru ShinodaPageof 12