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Biophysics and Physicobiology|May 24, 2021
A measure for the identification of preferred particle orientations in cryo-electron microscopy data: A simulation studyRyota Kojima, Takashi YoshidomeBiophysics (Nagoya-Shi, Japan)|November 19, 2016
Importance of water entropy in rotation mechanism of F1-ATPaseTakashi YoshidomeJournal of Computational Chemistry|December 19, 2023
Four-dimensional imaging for cryo-electron microscopy experiments using molecular simulations and manifold learningTakashi YoshidomePhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|April 28, 2009
Hydrophobicity at low temperatures and cold denaturation of a proteinTakashi Yoshidome, Masahiro KinoshitaThe Journal of Chemical Physics|April 17, 2009
Molecular origin of the negative heat capacity of hydrophilic hydrationMasahiro Kinoshita, Takashi YoshidomeJournal of Chemical Information and Modeling|January 23, 2026
Deep GIST: Deep Learning Models for Predicting the Distribution of Hydration Thermodynamics around ProteinsYusaku Fukushima, Takashi YoshidomePhysical Chemistry Chemical Physics : PCCP|September 28, 2012
Physical origin of hydrophobicity studied in terms of cold denaturation of proteins: comparison between water and simple fluidsTakashi Yoshidome, Masahiro KinoshitaJournal of Chemical Theory and Computation|December 14, 2016
Computational Methods for Configurational Entropy Using Internal and Cartesian CoordinatesSimon Hikiri, Takashi Yoshidome, Mitsunori IkeguchiPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|October 13, 2007
Free energy landscape and cooperatively rearranging region in a hard sphere glassTakashi Yoshidome, Akira Yoshimori, Takashi OdagakiPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|July 23, 2008
Free-energy landscape for a tagged particle in a dense hard-sphere fluidTakashi Yoshidome, Takashi Odagaki, Akira YoshimoriPageof 6