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The Journal of Physical Chemistry. B|June 9, 2011
Exploring the folding free energy landscape of a β-hairpin miniprotein, chignolin, using multiscale free energy landscape calculation methodRyuhei Harada, Akio KitaoThe Journal of Chemical Physics|July 26, 2013
Parallel Cascade Selection Molecular Dynamics (PaCS-MD) to generate conformational transition pathwayRyuhei Harada, Akio KitaoJournal of Chemical Theory and Computation|November 18, 2015
Nontargeted Parallel Cascade Selection Molecular Dynamics for Enhancing the Conformational Sampling of ProteinsRyuhei Harada, Akio KitaoJournal of Chemical Theory and Computation|November 24, 2015
The Fast-Folding Mechanism of Villin Headpiece Subdomain Studied by Multiscale Distributed ComputingRyuhei Harada, Akio KitaoMethods in Molecular Biology (Clifton, N.J.)|February 26, 2023
Molecular Simulation to Investigate Open-Close Motion of a Flagellar Export Apparatus Protein FlhACAkio KitaoThe Journal of Chemical Physics|August 3, 2011
Transform and relax sampling for highly anisotropic systems: application to protein domain motion and foldingAkio KitaoBiophysics and Physicobiology|January 28, 2020
More efficient screening of protein-protein complex model structures for reducing the number of candidatesKazuhiro Takemura, Akio KitaoThe Journal of Chemical Physics|October 15, 2013
MuSTAR MD: multi-scale sampling using temperature accelerated and replica exchange molecular dynamicsYu Yamamori, Akio KitaoCurrent Opinion in Structural Biology|November 6, 2016
High anisotropy and frustration: the keys to regulating protein function efficiently in crowded environmentsAkio Kitao, Kazuhiro TakemuraMagnetic Resonance in Chemistry : MRC|July 11, 2006
Amplitudes and directions of internal protein motions from a JAM analysis of 15N relaxation dataAkio Kitao, Gerhard WagnerPageof 19