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Scientific Reports|January 30, 2021
Benchmarking of numerical integration methods for ODE models of biological systemsPhilipp Städter, Yannik Schälte, Leonard Schmiester, et al.
Plos One|January 26, 2016
CERENA: ChEmical REaction Network Analyzer--A Toolbox for the Simulation and Analysis of Stochastic Chemical KineticsAtefeh Kazeroonian, Fabian Fröhlich, Andreas Raue, et al.
Iscience|April 20, 2026
Suggested experimental design and computational modeling to infer single-cell lipid dynamics from a single destructive measurementPaul Jonas Jost, Daniel Weindl, Klaus Wunderling, et al.
Briefings in Bioinformatics|October 7, 2021
A protocol for dynamic model calibrationAlejandro F Villaverde, Dilan Pathirana, Fabian Fröhlich, et al.
Bioinformatics (Oxford, England)|March 1, 2019
Benchmarking optimization methods for parameter estimation in large kinetic modelsAlejandro F Villaverde, Fabian Fröhlich, Daniel Weindl, et al.
EURASIP Journal on Bioinformatics & Systems Biology|June 2, 2012
A visual analytics approach for models of heterogeneous cell populationsJan Hasenauer, Julian Heinrich, Malgorzata Doszczak, et al.
Mathematical Biosciences|September 21, 2025
A dynamic model for Waddington's landscape accounting for cell-to-cell communicationSimon Merkt, Lara Fuhrmann, Erika Dudkin, et al.
BMC Bioinformatics|April 30, 2011
Identification of models of heterogeneous cell populations from population snapshot dataJan Hasenauer, Steffen Waldherr, Malgorzata Doszczak, et al.
Bioinformatics (Oxford, England)|August 30, 2023
Accessibility of covariance information creates vulnerability in Federated Learning frameworksManuel Huth, Jonas Arruda, Roy Gusinow, et al.
Plos Computational Biology|June 2, 2026
Data-driven model reveals increased stability of CAG-expanded huntingtin RNA due to MID1 bindingYuhong Liu, Annika Reisbitzer, Domagoj Dorešić, et al.
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