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Bioinformatics (Oxford, England)|September 11, 2019
A Gaussian process-based definition reveals new and bona fide genetic interactions compared to a multiplicative model in the Gram-negative Escherichia coliAshwani Kumar, Ali Hosseinnia, Alla Gagarinova, et al.Proteomics|February 13, 2013
Integrative network analysis of signaling in human CD34(+) hematopoietic progenitor cells by global phosphoproteomic profiling using TiO2 enrichment combined with 2D LC-MS/MS and pathway mappingHongbo Guo, Ruth Isserlin, Xiaoji Chen, et al.The Analyst|July 18, 2022
In vitro toxicity screening of amorphous silica nanoparticles using mitochondrial fraction exposure followed by MS-based proteomic analysisPremkumari Kumarathasan, Nazila Nazemof, Dalibor Breznan, et al.Cell Chemical Biology|December 11, 2025
Photo-proximity labeling in live primary neurons identifies an AMPA-receptor signal transducer in homeostatic synaptic plasticityAvik Basu, Yuan Tian, Sergei Kotelnikov, et al.Nature Communications|July 13, 2022
Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discoveryPierre C Havugimana, Raghuveera Kumar Goel, Sadhna Phanse, et al.Frontiers in Physiology|July 28, 2023
HDL functionality is dependent on hepatocyte stress defense factors Nrf1 and Nrf2Michael J Trites, Brynne M Stebbings, Hiroyuki Aoki, et al.Journal of Proteome Research|March 4, 2025
In Vitro Exposure of A549 and J774A.1 Cells to SiO2 and TiO2 Nanoforms and Related Cellular- and Molecular-Level Effects: Application of ProteomicsPremkumari Kumarathasan, Nazila Nazemof, Erica Blais, et al.Molecular Omics|April 17, 2018
Systems analysis of the genetic interaction network of yeast molecular chaperonesKamran Rizzolo, Ashwani Kumar, Yoshito Kakihara, et al.Nature Protocols|November 21, 2023
Co-fractionation-mass spectrometry to characterize native mitochondrial protein assemblies in mammalian neurons and brainMara Zilocchi, Matineh Rahmatbakhsh, Mohamed Taha Moutaoufik, et al.Journal of Proteomics|March 19, 2015
Extracting high confidence protein interactions from affinity purification data: at the crossroadsShuye Pu, James Vlasblom, Andrei Turinsky, et al.Pageof 8