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Plos One|January 13, 2010
Reaction factoring and bipartite update graphs accelerate the Gillespie Algorithm for large-scale biochemical systemsSagar Indurkhya, Jacob BealFrontiers in Bioengineering and Biotechnology|February 6, 2015
Bridging the gap: a roadmap to breaking the biological design barrierJacob BealFrontiers in Bioengineering and Biotechnology|July 16, 2015
Signal-to-Noise Ratio Measures Efficacy of Biological Computing Devices and CircuitsJacob BealMethods in Molecular Biology (Clifton, N.J.)|March 5, 2024
Flow Cytometry Quantification of Transient Transfections in Mammalian CellsJacob BealPhilosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences|June 17, 2015
Space-time programmingJacob Beal, Mirko ViroliEngineering Biology|December 19, 2025
Creating Enforceable Biosecurity Standards for Nucleic Acid ProvidersJacob Beal, Tessa AlexanianMolecular Systems Biology|December 17, 2020
Levels of autonomy in synthetic biology engineeringJacob Beal, Miles RogersACS Synthetic Biology|June 29, 2022
pySBOL3: SBOL3 for Python ProgrammersTom Mitchell, Jacob Beal, Bryan BartleyScientific Reports|April 3, 2023
Studying pathogens degrades BLAST-based pathogen identificationJacob Beal, Adam Clore, Jeff MantheyPlos One|August 19, 2011
Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networksJacob Beal, Ting Lu, Ron WeissPageof 9