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Protein Science : a Publication of the Protein Society|September 29, 2022
Cold spots are universal in protein-protein interactionsSagara N S Gurusinghe, Ben Oppenheimer, Julia M ShifmanBMC Bioinformatics|April 30, 2024
Cold Spot SCANNER: Colab Notebook for predicting cold spots in protein-protein interfacesSagara N S Gurusinghe, Julia M ShifmanBiorxiv : the Preprint Server for Biology|July 9, 2024
ProBASS - a language model with sequence and structural features for predicting the effect of mutations on binding affinitySagara N S Gurusinghe, Yibing Wu, William DeGrado, et al.Bioinformatics (Oxford, England)|May 9, 2025
ProBASS-a language model with sequence and structural features for predicting the effect of mutations on binding affinitySagara N S Gurusinghe, Yibing Wu, William DeGrado, et al.Scientific Reports|April 5, 2018
Glucose-regulated protein 78 substrate-binding domain alters its conformation upon EGCG inhibitor binding to nucleotide-binding domain: Molecular dynamics studiesK R D Sagara N S Gurusinghe, Aanchal Mishra, Seema MishraProtein Engineering, Design & Selection : PEDS|August 26, 2021
Computational design and experimental optimization of protein binders with prospects for biomedical applicationsAlessandro Bonadio, Julia M ShifmanMini Reviews in Medicinal Chemistry|October 2, 2015
RAS/Effector Interactions from Structural and Biophysical PerspectiveAriel Erijman, Julia M ShifmanPlos Computational Biology|December 31, 2009
Tradeoff between stability and multispecificity in the design of promiscuous proteinsMenachem Fromer, Julia M ShifmanProceedings of the National Academy of Sciences of the United States of America|November 5, 2003
Exploring the origins of binding specificity through the computational redesign of calmodulinJulia M Shifman, Stephen L MayoPageof 5