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Journal of Biomedical Semantics|December 15, 2011
An analysis of gene/protein associations at PubMed scaleSampo Pyysalo, Tomoko Ohta, Jun'ichi TsujiiBMC Bioinformatics|December 29, 2020
Dependency parsing of biomedical text with BERTJenna Kanerva, Filip Ginter, Sampo PyysaloPlos One|April 25, 2013
Large-scale event extraction from literature with multi-level gene normalizationSofie Van Landeghem, Jari Björne, Chih-Hsuan Wei, et al.BMC Bioinformatics|February 7, 2018
Bio-SimVerb and Bio-SimLex: wide-coverage evaluation sets of word similarity in biomedicineBilly Chiu, Sampo Pyysalo, Ivan Vulić, et al.Journal of Biomedical Semantics|December 15, 2011
Event extraction for DNA methylationTomoko Ohta, Sampo Pyysalo, Makoto Miwa, et al.BMC Bioinformatics|August 17, 2017
A neural network multi-task learning approach to biomedical named entity recognitionGamal Crichton, Sampo Pyysalo, Billy Chiu, et al.BMC Bioinformatics|May 23, 2018
Neural networks for link prediction in realistic biomedical graphs: a multi-dimensional evaluation of graph embedding-based approachesGamal Crichton, Yufan Guo, Sampo Pyysalo, et al.International Journal of Medical Informatics|March 31, 2009
Combining hidden Markov models and latent semantic analysis for topic segmentation and labeling: method and clinical applicationFilip Ginter, Hanna Suominen, Sampo Pyysalo, et al.BMC Bioinformatics|December 1, 2006
Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approachesSampo Pyysalo, Tapio Salakoski, Sophie Aubin, et al.International Journal of Medical Informatics|March 21, 2009
Towards automated processing of clinical Finnish: sublanguage analysis and a rule-based parserVeronika Laippala, Filip Ginter, Sampo Pyysalo, et al.Pageof 16