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Bioinformatics (Oxford, England)|November 23, 2025
SISTEM: simulation of tumor evolution, metastasis, and DNA-seq data under genotype-driven selectionSamson Weiner, Mukul S BansalLife Science Alliance|December 12, 2024
DICE: fast and accurate distance-based reconstruction of single-cell copy number phylogeniesSamson Weiner, Mukul S BansalBioinformatics (Oxford, England)|July 14, 2023
CNAsim: improved simulation of single-cell copy number profiles and DNA-seq data from tumorsSamson Weiner, Mukul S BansalAlgorithms for Molecular Biology : AMB|April 22, 2020
Linear-time algorithms for phylogenetic tree completion under Robinson-Foulds distanceMukul S BansalMethods in Molecular Biology (Clifton, N.J.)|September 9, 2022
Deciphering Microbial Gene Family Evolution Using Duplication-Transfer-Loss Reconciliation and RANGER-DTLMukul S BansalIEEE/ACM Transactions on Computational Biology and Bioinformatics|June 17, 2017
Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene TreesMisagh Kordi, Mukul S BansalIEEE/ACM Transactions on Computational Biology and Bioinformatics|July 12, 2018
An Integrated Reconciliation Framework for Domain, Gene, and Species Level EvolutionLei Li, Mukul S BansalIEEE/ACM Transactions on Computational Biology and Bioinformatics|November 8, 2008
An Omega(n2/ log n) speed-up of TBR heuristics for the gene-duplication problemMukul S Bansal, Oliver EulensteinIEEE/ACM Transactions on Computational Biology and Bioinformatics|January 6, 2017
On the Complexity of Duplication-Transfer-Loss Reconciliation with Non-Binary Gene TreesMisagh Kordi, Mukul S BansalBioinformatics (Oxford, England)|February 5, 2019
SaGePhy: an improved phylogenetic simulation framework for gene and subgene evolutionSoumya Kundu, Mukul S BansalPageof 5