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Bioinformatics (Oxford, England)|June 17, 2014
Pareto-optimal phylogenetic tree reconciliationRan Libeskind-Hadas, Yi-Chieh Wu, Mukul S Bansal, et al.Bioinformatics (Oxford, England)|August 12, 2024
Improved allele-specific single-cell copy number estimation in low-coverage DNA-sequencingSamson Weiner, Bingjun Li, Sheida NabaviBMC Bioinformatics|November 25, 2010
iGTP: a software package for large-scale gene tree parsimony analysisRuchi Chaudhary, Mukul S Bansal, André Wehe, et al.Genome Biology and Evolution|August 20, 2024
Investigating Additive and Replacing Horizontal Gene Transfers Using Phylogenies and Whole GenomesLina Kloub, Sophia Gosselin, Joerg Graf, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 20, 2022
virDTL: Viral Recombination Analysis Through Phylogenetic Reconciliation and Its Application to Sarbecoviruses and SARS-CoV-2Sumaira Zaman, Samuel Sledzieski, Bonnie Berger, et al.Plos One|May 16, 2020
Assessing the accuracy of phylogenetic rooting methods on prokaryotic gene familiesTaylor Wade, L Thiberio Rangel, Soumya Kundu, et al.Bioinformatics (Oxford, England)|January 22, 2013
Systematic inference of highways of horizontal gene transfer in prokaryotesMukul S Bansal, Guy Banay, Timothy J Harlow, et al.Molecular Biology and Evolution|February 10, 2021
Systematic Detection of Large-Scale Multigene Horizontal Transfer in ProkaryotesLina Kloub, Sean Gosselin, Matthew Fullmer, et al.Bioinformatics (Oxford, England)|February 8, 2023
DaTeR: error-correcting phylogenetic chronograms using relative time constraintsAbhijit Mondal, L Thiberio Rangel, Jack G Payette, et al.Systematic Biology|December 28, 2010
Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene treesJ Gordon Burleigh, Mukul S Bansal, Oliver Eulenstein, et al.Pageof 5