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Systematic Biology|April 15, 2022
A Linear Time Solution to the Labeled Robinson-Foulds Distance ProblemSamuel Briand, Christophe Dessimoz, Nadia El-Mabrouk, et al.BMC Genomics|November 19, 2020
A generalized Robinson-Foulds distance for labeled treesSamuel Briand, Christophe Dessimoz, Nadia El-Mabrouk, et al.Bioinformatics Advances|February 25, 2026
OMAnnotator: a novel approach to building an annotated consensus genome sequenceSadé Bates, Christophe Dessimoz, Yannis NeversGenome Biology|June 8, 2023
Protein length distribution is remarkably uniform across the tree of lifeYannis Nevers, Natasha M Glover, Christophe Dessimoz, et al.Genome Biology and Evolution|May 14, 2024
Matreex: Compact and Interactive Visualization for Scalable Studies of Large Gene FamiliesVictor Rossier, Clement Train, Yannis Nevers, et al.Nature Structural & Molecular Biology|October 10, 2025
Structural phylogenetics unravels the evolutionary diversification of communication systems in gram-positive bacteria and their virusesDavid Moi, Charles Bernard, Martin Steinegger, et al.F1000Research|June 21, 2022
How to build phylogenetic species trees with OMADavid Dylus, Yannis Nevers, Adrian M Altenhoff, et al.Bioinformatics (Oxford, England)|June 25, 2025
Annotation matters: the effect of structural gene annotation on orthology inferenceSilvia Prieto-Baños, Yannis Nevers, Adrian Altenhoff, et al.Nature Biotechnology|February 21, 2024
Quality assessment of gene repertoire annotations with OMArkYannis Nevers, Alex Warwick Vesztrocy, Victor Rossier, et al.Journal of Bioinformatics and Computational Biology|August 7, 2004
Deriving haplotypes through recombination and gene conversion pathwaysNadia el-MabroukPageof 16