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The Journal of Physical Chemistry. B|June 26, 2025
Hydrophobicity in Intrinsically Disordered Protein Force Fields: Implications for Conformational Ensembles and Protein-Protein InteractionsSamuel Lobo, Saeed Najafi, M Scott Shell, et al.The Journal of Physical Chemistry. B|February 5, 2025
Context Dependency of Hydrophobicity in Intrinsically Disordered Proteins: Insights from a New Dewetting Free Energy-Based Hydrophobicity ScaleSaeed Najafi, Samuel Lobo, M Scott Shell, et al.Biorxiv : the Preprint Server for Biology|June 22, 2026
Context-Aware Hydrophobicity Modeling: HydroMap and FastHydroMapSamuel Lobo, Saeed Najafi, Joan-Emma Shea, et al.Proceedings of the National Academy of Sciences of the United States of America|May 26, 2026
amyloid-predict and LLPS-predict: Predicting phase separation propensities in the intrinsically disordered proteomeSamuel Lobo, Leif Griem, M Scott Shell, et al.Proceedings of the National Academy of Sciences of the United States of America|April 28, 2025
Water-directed pinning is key to tau prion formationMichael P Vigers, Samuel Lobo, Saeed Najafi, et al.Biorxiv : the Preprint Server for Biology|December 11, 2023
Tau P301L mutation promotes core 4R tauopathy fibril fold through near-surface water structuring and conformational rearrangementMichael P Vigers, Samuel Lobo, Saeed Najafi, et al.Methods in Molecular Biology (Clifton, N.J.)|October 13, 2022
Field-Theoretic Simulation Method to Study the Liquid-Liquid Phase Separation of PolymersSaeed Najafi, James McCarty, Kris T Delaney, et al.Annual Review of Physical Chemistry|January 23, 2026
Computational Modeling of Biomolecular Phase Separation: Current Progress and Open ChallengesAzamat Rizuan, Shiv Rekhi, Young C Kim, et al.Nature Communications|November 28, 2022
Hydrophobicity of arginine leads to reentrant liquid-liquid phase separation behaviors of arginine-rich proteinsYuri Hong, Saeed Najafi, Thomas Casey, et al.Biomacromolecules|June 9, 2023
Mechanical Behavior of Octopus Egg Tethers Composed of Topologically Constrained, Tandemly Repeated EGF DomainsWilliam R Wonderly, Daniel G DeMartini, Saeed Najafi, et al.Pageof 28