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Plos One|June 1, 2017
Rapid detection and strain typing of Chlamydia trachomatis using a highly multiplexed microfluidic PCR assayRosemary S Turingan, Ludmila Kaplun, Greice Krautz-Peterson, et al.Plos One|June 16, 2015
'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in PathogensColin J Worby, Timothy D ReadPeerj|July 18, 2018
Staphylococcus aureus viewed from the perspective of 40,000+ genomesRobert A Petit, Timothy D ReadGenome Medicine|January 17, 2015
Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriologyTimothy D Read, Ruth C MasseyMsystems|August 6, 2020
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial GenomesRobert A Petit, Timothy D ReadBioinformatics (Oxford, England)|March 22, 2008
Scaffolding and validation of bacterial genome assemblies using optical restriction mapsNiranjan Nagarajan, Timothy D Read, Mihai PopMicrobiology Resource Announcements|February 24, 2026
CtGAP 2.0: enhanced genome assembly, strain resolution, and phylogenomics for Chlamydia trachomatisOlusola Olagoke, Timothy D Read, Deborah DeanAntimicrobial Agents and Chemotherapy|January 26, 2026
Putative azithromycin resistance mutations in Chlamydia trachomatis are globally distributed but arose before azithromycin was discoveredParul Sharma, Deborah Dean, Timothy D ReadScientific Reports|September 17, 2016
Dynamics of genome change among Legionella speciesSandeep J Joseph, Daniel Cox, Bernard Wolff, et al.Pageof 21