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Proteins|September 11, 2022
Mapping of antibody epitopes based on docking and homology modelingIsrael T Desta, Sergei Kotelnikov, George Jones, et al.Proceedings of the National Academy of Sciences of the United States of America|July 15, 2016
Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifoldsDzmitry Padhorny, Andrey Kazennov, Brandon S Zerbe, et al.Plos One|July 19, 2012
A first-generation multi-functional cytokine for simultaneous optical tracking and tumor therapyShawn Hingtgen, Randa Kasmieh, Elizabeth Elbayly, et al.Journal of Computer-Aided Molecular Design|November 5, 2017
Protein-ligand docking using FFT based sampling: D3R case studyDzmitry Padhorny, David R Hall, Hanieh Mirzaei, et al.Biorxiv : the Preprint Server for Biology|December 11, 2023
MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex PredictionErnest Glukhov, Dmytro Kalitin, Darya Stepanenko, et al.Current Opinion in Drug Discovery & Development|May 30, 2006
Characterization of protein-ligand interaction sites using experimental and computational methodsSandor Vajda, Frank GuarnieriBiochemistry|December 19, 2019
Interaction Energetics and Druggability of the Protein-Protein Interaction between Kelch-like ECH-Associated Protein 1 (KEAP1) and Nuclear Factor Erythroid 2 Like 2 (Nrf2)Mengqi Zhong, Andrew Lynch, Samantha N Muellers, et al.Journal of Molecular Biology|April 8, 2018
ClusPro FMFT-SAXS: Ultra-fast Filtering Using Small-Angle X-ray Scattering Data in Protein DockingMikhail Ignatov, Andrey Kazennov, Dima KozakovJournal of the American Chemical Society|March 20, 2013
Comprehensive experimental and computational analysis of binding energy hot spots at the NF-κB essential modulator/IKKβ protein-protein interfaceMary S Golden, Shaun M Cote, Marianna Sayeg, et al.Pageof 33