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Proteins|March 7, 2020
ClusPro in rounds 38 to 45 of CAPRI: Toward combining template-based methods with free dockingDzmitry Padhorny, Kathryn A Porter, Mikhail Ignatov, et al.Methods in Molecular Biology (Clifton, N.J.)|February 26, 2017
Detection of Peptide-Binding Sites on Protein Surfaces Using the Peptimap ServerTanggis Bohnuud, George Jones, Ora Schueler-Furman, et al.Drug Discovery Today|October 3, 2025
Improving B-cell epitope predictionHao Yu, Diane Joseph-McCarthy, Sandor VajdaJournal of Computer-Aided Molecular Design|June 13, 2009
Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidaseMelissa R Landon, Raquel L Lieberman, Quyen Q Hoang, et al.Methods in Molecular Biology (Clifton, N.J.)|July 5, 2020
Protein-Protein and Protein-Peptide Docking with ClusPro ServerAndrey Alekseenko, Mikhail Ignatov, George Jones, et al.Journal of Computer-Aided Molecular Design|September 19, 2003
Improved mapping of protein binding sitesTamas Kortvelyesi, Michael Silberstein, Sheldon Dennis, et al.Nucleic Acids Research|June 25, 2004
Consensus alignment server for reliable comparative modeling with distant templatesJahnavi C Prasad, Sandor Vajda, Carlos J CamachoBiochemistry|August 2, 2006
Computational solvent mapping reveals the importance of local conformational changes for broad substrate specificity in mammalian cytochromes P450Karl H Clodfelter, David J Waxman, Sandor VajdaProteins|June 28, 2005
Performance of the first protein docking server ClusPro in CAPRI rounds 3-5Stephen R Comeau, Sandor Vajda, Carlos J CamachoJournal of Medicinal Chemistry|June 13, 2019
Why Some Targets Benefit from beyond Rule of Five DrugsMegan Egbert, Adrian Whitty, György M Keserű, et al.Pageof 33