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Molecular Biology and Evolution|October 12, 2013
Modeling gene expression evolution with an extended Ornstein-Uhlenbeck process accounting for within-species variationRori V Rohlfs, Patrick Harrigan, Rasmus NielsenBioinformatics (Oxford, England)|March 5, 2025
vcfgl: a flexible genotype likelihood simulator for VCF/BCF filesIsin Altinkaya, Rasmus Nielsen, Thorfinn Sand KorneliussenMolecular Ecology|November 25, 2003
Estimating effective paternity number in social insects and the effective number of alleles in a populationRasmus Nielsen, David R Tarpy, H Kern ReeveGenetics|May 22, 2008
Estimation of 2Nes from temporal allele frequency dataJonathan P Bollback, Thomas L York, Rasmus NielsenPlos Genetics|October 17, 2012
Distinguishing between selective sweeps from standing variation and from a de novo mutationBenjamin M Peter, Emilia Huerta-Sanchez, Rasmus NielsenTheoretical Population Biology|March 5, 2003
Maximum likelihood and Bayesian methods for estimating the distribution of selective effects among classes of mutations using DNA polymorphism dataCarlos D Bustamante, Rasmus Nielsen, Daniel L HartlSystematic Biology|May 15, 2003
Stochastic mapping of morphological charactersJohn P Huelsenbeck, Rasmus Nielsen, Jonathan P BollbackPlos Genetics|September 14, 2019
An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence dataAaron J Stern, Peter R Wilton, Rasmus NielsenMolecular Biology and Evolution|December 26, 2001
A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodentsCarlos D Bustamante, Rasmus Nielsen, Daniel L HartlMolecular Biology and Evolution|October 26, 2019
A Bayesian Framework for Inferring the Influence of Sequence Context on Point MutationsGuy Ling, Danielle Miller, Rasmus Nielsen, et al.Pageof 34