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Scientific Reports|April 11, 2017
Capturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics SimulationsDavid R Bell, Sara Y Cheng, Heber Salazar, et al.Data in Brief|May 6, 2020
Data showing the lipid conformations and membrane binding behaviors of beta-amyloid fibrils in phase-separated cholesterol-enriched lipid domains with and without glycolipid and oxidized cholesterol from coarse-grained molecular dynamics simulationsSara Y Cheng, Yiyi Cao, Marzieh Rouzbehani, et al.Biophysical Chemistry|March 18, 2020
Coarse-grained MD simulations reveal beta-amyloid fibrils of various sizes bind to interfacial liquid-ordered and liquid-disordered regions in phase separated lipid rafts with diverse membrane-bound conformational statesSara Y Cheng, Yiyi Cao, Marzieh Rouzbehani, et al.Biophysical Chemistry|July 13, 2015
Lipid insertion domain unfolding regulates protein orientational transition behavior in a lipid bilayerKwan Hon Cheng, Liming Qiu, Sara Y Cheng, et al.Journal of Chemical Theory and Computation|July 15, 2014
Hydration Free Energy from Orthogonal Space Random Walk and Polarizable Force FieldJayvee R Abella, Sara Y Cheng, Qiantao Wang, et al.Data in Brief|April 8, 2016
Data supporting beta-amyloid dimer structural transitions and protein-lipid interactions on asymmetric lipid bilayer surfaces using MD simulations on experimentally derived NMR protein structuresSara Y Cheng, George Chou, Creighton Buie, et al.Chemistry and Physics of Lipids|February 2, 2016
Maximally asymmetric transbilayer distribution of anionic lipids alters the structure and interaction with lipids of an amyloidogenic protein dimer bound to the membrane surfaceSara Y Cheng, George Chou, Creighton Buie, et al.Biophysical Chemistry|February 1, 2015
Characterization of 3D Voronoi tessellation nearest neighbor lipid shells provides atomistic lipid disruption profile of protein containing lipid membranesSara Y Cheng, Hai V Duong, Campbell Compton, et al.Annual Review of Biophysics|March 28, 2019
Polarizable Force Fields for Biomolecular Simulations: Recent Advances and ApplicationsZhifeng Jing, Chengwen Liu, Sara Y Cheng, et al.International Journal of Molecular Sciences|April 3, 2021
Configurational Entropy of Folded Proteins and Its Importance for Intrinsically Disordered ProteinsMeili Liu, Akshaya K Das, James Lincoff, et al.Pageof 2