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Current Opinion in Genetics & Development|January 8, 2021
Finding needles in a haystack: dissecting tumor heterogeneity with single-cell transcriptomic and chromatin accessibility profilingSarah E Pierce, Samuel H Kim, William J GreenleafNature Communications|May 21, 2021
High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancerSarah E Pierce, Jeffrey M Granja, William J GreenleafGenome Research|November 21, 2024
KAS-ATAC reveals the genome-wide single-stranded accessible chromatin landscape of the human genomeSamuel H Kim, Georgi K Marinov, William J GreenleafNature Genetics|February 26, 2021
ArchR is a scalable software package for integrative single-cell chromatin accessibility analysisJeffrey M Granja, M Ryan Corces, Sarah E Pierce, et al.Methods (San Diego, Calif.)|December 3, 2014
Assaying the epigenome in limited numbers of cellsWilliam J GreenleafBiorxiv : the Preprint Server for Biology|August 8, 2025
An automated ATAC-seq method reveals sequence determinants of transcription factor dose response in the open chromatinBetty B Liu, Masaru Shimasawa, Sidney Vermeulen, et al.Methods in Molecular Biology (Clifton, N.J.)|February 22, 2023
Simultaneous Single-Cell Profiling of the Transcriptome and Accessible Chromatin Using SHARE-seqSamuel H Kim, Georgi K Marinov, S Tansu Bagdatli, et al.Genome Biology|July 9, 2014
The future of sequencing: convergence of intelligent design and market DarwinismWilliam J Greenleaf, Arend SidowBiorxiv : the Preprint Server for Biology|July 10, 2026
A Simple, Cost-Effective, High-Throughput Method for Measuring Chromatin Accessibility and Gene Expression in Single NucleiZhifei Luo, William J GreenleafTrends in Cell Biology|October 7, 2015
Beyond the Linear Genome: Paired-End Sequencing as a Biophysical ToolViviana I Risca, William J GreenleafPageof 23