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Patterns (New York, N.Y.)|May 27, 2024
Improving antibody language models with native pairingSarah M Burbach, Bryan BrineyBiorxiv : the Preprint Server for Biology|March 10, 2025
A curriculum learning approach to training antibody language modelsSarah M Burbach, Bryan BrineyPlos Computational Biology|September 11, 2025
A curriculum learning approach to training antibody language modelsSarah M Burbach, Bryan BrineyBiorxiv : the Preprint Server for Biology|May 4, 2026
Evaluating Expert Specialization in Mixture-of-Experts Antibody Language ModelsSarah M Burbach, Simone Spandau, Jonathan Hurtado, et al.Bioinformatics Advances|October 27, 2023
AntiRef: reference clusters of human antibody sequencesBryan BrineyBiorxiv : the Preprint Server for Biology|November 24, 2025
GhostFold: Accurate protein structure prediction using structure-constrained synthetic coevolutionary signalsNitesh Mishra, Bryan BrineyPatterns (New York, N.Y.)|June 27, 2025
Focused learning by antibody language models using preferential masking of non-templated regionsKarenna Ng, Bryan BrineyBiorxiv : the Preprint Server for Biology|September 15, 2025
Data-optimal scaling of paired antibody language modelsMahdi Shafiei Neyestanak, Sarah M Burbach, Karenna Ng, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
A Single-Cell Atlas of Transcriptional and Immunoglobulin Repertoire Evolution in Early B Cell DevelopmentCharlotte DiBiase, Jonathan Hurtado, Bryan BrineyScientific Reports|January 26, 2020
Comparisons of the antibody repertoires of a humanized rodent and humans by high throughput sequencingCollin Joyce, Dennis R Burton, Bryan BrineyPageof 8