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Genes|January 23, 2024
When Protein Structure Embedding Meets Large Language ModelsSarwan Ali, Prakash Chourasia, Murray PattersonMedical & Biological Engineering & Computing|April 15, 2024
From PDB files to protein features: a comparative analysis of PDB bind and STCRDAB datasetsSarwan Ali, Prakash Chourasia, Murray PattersonIEEE Transactions on Computational Biology and Bioinformatics|October 15, 2025
Nearest Neighbor CCP-Based Molecular Sequence AnalysisSarwan Ali, Prakash Chourasia, Bipin Koirala, et al.IEEE Transactions on Computational Biology and Bioinformatics|April 17, 2026
Compression and k-mer Based Approach for Anticancer Peptide AnalysisSarwan Ali, Tamkanat E Ali, Prakash Chourasia, et al.Medical & Biological Engineering & Computing|July 3, 2023
ViralVectors: compact and scalable alignment-free virome feature generationSarwan Ali, Prakash Chourasia, Zahra Tayebi, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 17, 2026
DANCE: Deep Learning-Assisted Analysis of ProteiN Sequences Using Chaos Enhanced Kaleidoscopic ImagesTaslim Murad, Prakash Chourasia, Sarwan Ali, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 2, 2023
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads DataPrakash Chourasia, Sarwan Ali, Simone Ciccolella, et al.Biology|March 26, 2022
PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike SequencesSarwan Ali, Babatunde Bello, Prakash Chourasia, et al.Peerj. Computer Science|December 9, 2024
TCellR2Vec: efficient feature selection for TCR sequences for cancer classificationZahra Tayebi, Sarwan Ali, Murray PattersonBiology|June 28, 2023
Exploring the Potential of GANs in Biological Sequence AnalysisTaslim Murad, Sarwan Ali, Murray PattersonPageof 4